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Volume 11; Issue 1 Suppleme
Main
BMC Bioinformatics
Volume 11; Issue 1 Suppleme
BMC Bioinformatics
Volume 11; Issue 1 Suppleme
1
APBC 2010. The Eighth Asia Pacific Bioinformatics Conference Bangalore, India, 18-21 January 2010
Laxmi Parida
,
Gene Myers
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 128 KB
Your tags:
english, 2010
2
Nonnegative principal component analysis for mass spectral serum profiles and biomarker discovery
Henry Han
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.75 MB
Your tags:
english, 2010
3
PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship
Inkyung Jung
,
Akihisa Matsuyama
,
Minoru Yoshida
,
Dongsup Kim
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 619 KB
Your tags:
english, 2010
4
Fast motif recognition via application of statistical thresholds
Christina Boucher
,
James King
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 492 KB
Your tags:
english, 2010
5
Short clones or long clones? A simulation study on the use of paired reads in metagenomics
Suparna Mitra
,
Max Schubach
,
Daniel H Huson
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 2.19 MB
Your tags:
english, 2010
6
In silico screening of herbal and nanoparticle lead compounds for effectivity against H5N1, H1N1 neuraminidase and telomerase
Sayak Ganguli
,
Manjita Mazumder
,
Protip Basu
,
Paushali Roy
,
Sayani Mitra
,
Abhijit Datta
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 136 KB
Your tags:
english, 2010
7
Prediction of novel miRNAs and associated target genes inGlycine max
Trupti Joshi
,
Zhe Yan
,
Marc Libault
,
Dong-Hoon Jeong
,
Sunhee Park
,
Pamela J Green
,
D Janine Sherrier
,
Andrew Farmer
,
Greg May
,
Blake C Meyers
,
Dong Xu
,
Gary Stacey
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.67 MB
Your tags:
english, 2010
8
MrsRF: an efficient MapReduce algorithm for analyzing large collections of evolutionary trees
Suzanne J Matthews
,
Tiffani L Williams
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.18 MB
Your tags:
english, 2010
9
Classification of protein sequences by means of irredundant patterns
Matteo Comin
,
Davide Verzotto
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.12 MB
Your tags:
english, 2010
10
Amino acid classification based spectrum kernel fusion for protein subnuclear localization
Suyu Mei
,
Wang Fei
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 966 KB
Your tags:
english, 2010
11
Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso
Can Yang
,
Xiang Wan
,
Qiang Yang
,
Hong Xue
,
Weichuan Yu
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 757 KB
Your tags:
english, 2010
12
AntiBP2: improved version of antibacterial peptide prediction
Sneh Lata
,
Nitish K Mishra
,
Gajendra PS Raghava
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 759 KB
Your tags:
english, 2010
13
MTar: a computational microRNA target prediction architecture for human transcriptome
Vinod Chandra
,
Reshmi Girijadevi
,
Achuthsankar S Nair
,
Sreenadhan S Pillai
,
Radhakrishna M Pillai
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.16 MB
Your tags:
english, 2010
14
Integration of multiple data sources to prioritize candidate genes using discounted rating system
Yongjin Li
,
Jagdish C Patra
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 660 KB
Your tags:
english, 2010
15
Learning to predict expression efficacy of vectors in recombinant protein production
Wen-Ching Chan
,
Po-Huang Liang
,
Yan-Ping Shih
,
Ueng-Cheng Yang
,
Wen-chang Lin
,
Chun-Nan Hsu
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.91 MB
Your tags:
english, 2010
16
SFSSClass: an integrated approach for miRNA based tumor classification
Ramkrishna Mitra
,
Sanghamitra Bandyopadhyay
,
Ujjwal Maulik
,
Michael Q Zhang
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 423 KB
Your tags:
english, 2010
17
An ontology-based search engine for protein-protein interactions
Byungkyu Park
,
Kyungsook Han
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 715 KB
Your tags:
english, 2010
18
HORI: a web server to compute Higher Order Residue Interactions in protein structures
Pandurangan Sundaramurthy
,
Khader Shameer
,
Raashi Sreenivasan
,
Sunita Gakkhar
,
Ramanathan Sowdhamini
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 567 KB
Your tags:
english, 2010
19
A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles
Chia-Hao Chin
,
Shu-Hwa Chen
,
Chin-Wen Ho
,
Ming-Tat Ko
,
Chung-Yen Lin
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 3.43 MB
Your tags:
english, 2010
20
Using genomic signatures for HIV-1 sub-typing
Aridaman Pandit
,
Somdatta Sinha
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.63 MB
Your tags:
english, 2010
21
Genome rearrangements with duplications
Martin Bader
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 784 KB
Your tags:
english, 2010
22
Decoding HMMs using thekbest paths: algorithms and applications
Daniel G Brown
,
Daniil Golod
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 358 KB
Your tags:
english, 2010
23
Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM)
Sumeet Agarwal
,
Candida Vaz
,
Alok Bhattacharya
,
Ashwin Srinivasan
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 498 KB
Your tags:
english, 2010
24
Predicting the protein-protein interactions using primary structures with predicted protein surface
Darby Tien-Hao Chang
,
Yu-Tang Syu
,
Po-Chang Lin
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.51 MB
Your tags:
english, 2010
25
Heuristics for the inversion median problem
Vaibhav Rajan
,
Andrew Wei Xu
,
Yu Lin
,
Krister M Swenson
,
Bernard ME Moret
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.69 MB
Your tags:
english, 2010
26
Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism
Hiroto Saigo
,
Masahiro Hattori
,
Hisashi Kashima
,
Koji Tsuda
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 984 KB
Your tags:
english, 2010
27
Detection of characteristic sub pathway network for angiogenesis based on the comprehensive pathway network
Yezhou Huang
,
Shao Li
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.00 MB
Your tags:
english, 2010
28
A weightedq-gram method for glycan structure classification
Limin Li
,
Wai-Ki Ching
,
Takako Yamaguchi
,
Kiyoko F Aoki-Kinoshita
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 213 KB
Your tags:
english, 2010
29
Efficient protein alignment algorithm for protein search
Zaixin Lu
,
Zhiyu Zhao
,
Bin Fu
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 996 KB
Your tags:
english, 2010
30
Functional characterization and topological modularity of molecular interaction networks
Jayesh Pandey
,
Mehmet Koyutürk
,
Ananth Grama
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.46 MB
Your tags:
english, 2010
31
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspective
SPT Krishnan
,
Sim Sze Liang
,
Bharadwaj Veeravalli
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.51 MB
Your tags:
english, 2010
32
Hit integration for identifying optimal spaced seeds
Won-Hyoung Chung
,
Seong-Bae Park
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 579 KB
Your tags:
english, 2010
33
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Adi Mano
,
Tamir Tuller
,
Oded Béjà
,
Ron Y Pinter
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 973 KB
Your tags:
english, 2010
34
A hybrid approach to protein folding problem integrating constraint programming with local search
Abu Dayem Ullah
,
Kathleen Steinhöfel
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 294 KB
Your tags:
english, 2010
35
Better score function for peptide identification with ETD MS/MS spectra
Xiaowen Liu
,
Baozhen Shan
,
Lei Xin
,
Bin Ma
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 533 KB
Your tags:
english, 2010
36
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Daniel G Brown
,
Jakub Truszkowski
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 518 KB
Your tags:
english, 2010
37
Analysis of interactions between ribosomal proteins and RNA structural motifs
Giovanni Ciriello
,
Claudio Gallina
,
Concettina Guerra
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.36 MB
Your tags:
english, 2010
38
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Mukul S Bansal
,
J Gordon Burleigh
,
Oliver Eulenstein
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 279 KB
Your tags:
english, 2010
39
Stability analysis of the GAL regulatory network inSaccharomyces cerevisiaeandKluyveromyces lactis
Vishwesh V Kulkarni
,
Venkatesh Kareenhalli
,
Pushkar Malakar
,
Lucy Y Pao
,
Michael G Safonov
,
Ganesh A Viswanathan
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1005 KB
Your tags:
english, 2010
40
Structure prediction for the helical skeletons detected from the low resolution protein density map
Kamal Al Nasr
,
Weitao Sun
,
Jing He
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.45 MB
Your tags:
english, 2010
41
A novel approach for haplotype-based association analysis using family data
Yixuan Chen
,
Xin Li
,
Jing Li
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.65 MB
Your tags:
english, 2010
42
A fast indexing approach for protein structure comparison
Lei Zhang
,
James Bailey
,
Arun S Konagurthu
,
Kotagiri Ramamohanarao
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 882 KB
Your tags:
english, 2010
43
Computational prediction of type III secreted proteins from gram-negative bacteria
Yang Yang
,
Jiayuan Zhao
,
Robyn L Morgan
,
Wenbo Ma
,
Tao Jiang
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 484 KB
Your tags:
english, 2010
44
Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information
Nitish K Mishra
,
Gajendra PS Raghava
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 398 KB
Your tags:
english, 2010
45
Comparative analysis of thermophilic and mesophilic proteins using Protein Energy Networks
MS Vijayabaskar
,
Saraswathi Vishveshwara
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 2.53 MB
Your tags:
english, 2010
46
A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data
Pengyi Yang
,
Bing B Zhou
,
Zili Zhang
,
Albert Y Zomaya
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.38 MB
Your tags:
english, 2010
47
Discrete wavelet transform de-noising in eukaryotic gene splicing
Tina P George
,
Tessamma Thomas
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 2.44 MB
Your tags:
english, 2010
48
Comparison of PGH2binding site in prostaglandin synthases
Padmapriya Paragi-Vedanthi
,
Mukesh Doble
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.33 MB
Your tags:
english, 2010
49
Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm
Chih-Hung Hsieh
,
Darby Tien-Hao Chang
,
Cheng-Hao Hsueh
,
Chi-Yeh Wu
,
Yen-Jen Oyang
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.43 MB
Your tags:
english, 2010
50
Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway ofMycobacterium tuberculosis
Aarti Garg
,
Rupinder Tewari
,
Gajendra PS Raghava
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.31 MB
Your tags:
english, 2010
51
Estimating true evolutionary distances under rearrangements, duplications, and losses
Yu Lin
,
Vaibhav Rajan
,
Krister M Swenson
,
Bernard ME Moret
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 983 KB
Your tags:
english, 2010
52
An automated framework for understanding structural variations in the binding grooves of MHC class II molecules
Kalidas Yeturu
,
Tapani Utriainen
,
Graham JL Kemp
,
Nagasuma Chandra
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 3.54 MB
Your tags:
english, 2010
53
Active learning for human protein-protein interaction prediction
Thahir P Mohamed
,
Jaime G Carbonell
,
Madhavi K Ganapathiraju
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.05 MB
Your tags:
english, 2010
54
Active machine learning for transmembrane helix prediction
Hatice U Osmanbeyoglu
,
Jessica A Wehner
,
Jaime G Carbonell
,
Madhavi K Ganapathiraju
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 657 KB
Your tags:
english, 2010
55
Translog, a web browser for studying the expression divergence of homologous genes
Xianjun Dong
,
Altuna Akalin
,
Yogita Sharma
,
Boris Lenhard
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.00 MB
Your tags:
english, 2010
56
Genome-wide sequence-based prediction of peripheral proteins using a novel semi-supervised learning technique
Nitin Bhardwaj
,
Mark Gerstein
,
Hui Lu
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 516 KB
Your tags:
english, 2010
57
A parameter-adaptive dynamic programming approach for inferring cophylogenies
Daniel Merkle
,
Martin Middendorf
,
Nicolas Wieseke
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 725 KB
Your tags:
english, 2010
58
NeMo: Network Module identification in Cytoscape
Corban G Rivera
,
Rachit Vakil
,
Joel S Bader
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 2.20 MB
Your tags:
english, 2010
59
An integrative modular approach to systematically predict gene-phenotype associations
Michael R Mehan
,
Juan Nunez-Iglesias
,
Chao Dai
,
Michael S Waterman
,
Xianghong Jasmine Zhou
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 2.79 MB
Your tags:
english, 2010
60
Bidirectional best hitr-window gene clusters
Melvin Zhang
,
Hon Wai Leong
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 525 KB
Your tags:
english, 2010
61
Predicting protein functions by relaxation labelling protein interaction network
Pingzhao Hu
,
Hui Jiang
,
Andrew Emili
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 504 KB
Your tags:
english, 2010
62
Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data
Ravi Gupta
,
Priyankara Wikramasinghe
,
Anirban Bhattacharyya
,
Francisco A Perez
,
Sharmistha Pal
,
Ramana V Davuluri
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 904 KB
Your tags:
english, 2010
63
BayesMotif: de novo protein sorting motif discovery from impure datasets
Jianjun Hu
,
Fan Zhang
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.64 MB
Your tags:
english, 2010
64
Formal reasoning on qualitative models of coinfection of HIV and Tuberculosis and HAART therapy
Anil Sorathiya
,
Andrea Bracciali
,
Pietro Liò
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.01 MB
Your tags:
english, 2010
65
Molecular dynamics simulation studies andin vitrosite directed mutagenesis of avian beta-defensin Apl_AvBD2
Soja Saghar Soman
,
Krishnankutty Chandrika Sivakumar
,
Easwaran Sreekumar
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 5.70 MB
Your tags:
english, 2010
66
Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships
Junhee Seok
,
Amit Kaushal
,
Ronald W Davis
,
Wenzhong Xiao
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 636 KB
Your tags:
english, 2010
67
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure
Jian-Yi Yang
,
Zhen-Ling Peng
,
Xin Chen
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 908 KB
Your tags:
english, 2010
68
Reverse engineering gene regulatory network from microarray data using linear time-variant model
Mitra Kabir
,
Nasimul Noman
,
Hitoshi Iba
Journal:
BMC Bioinformatics
Year:
2010
Language:
english
File:
PDF, 1.48 MB
Your tags:
english, 2010
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